Like mentioned a couple times here, I like to check the harmonics at the 12th fret. It's tricky at first to time it, but once you get the hang of it, it is a quic and accurate check for intonation. Just touch the string with your left hand finger (don't push the string down, just lightly touch it). As you are touching the string, pluck that string with your right hand finger. As you pluck it, quickly lift your left finger off the string. The timing will be slightly after your pluck. The string will be a "bell" like ring at the same note as the open string if intonation is set correctly (same note, but an octive higher). So, if you are doing the "A" string, you should get an "A" plucking the open string, and the "Bell" sounding an "A" doing the 12th fret harmonic as said above. And so on with each string. If ya do, your intonation is good.